Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.94■□□□□ 0.3
RNF40O75150 AC105233.2-201ENST00000523697 349 ntBASIC16.94■□□□□ 0.3
RNF40O75150 AF228730.5-201ENST00000530288 346 ntBASIC16.94■□□□□ 0.3
RNF40O75150 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.94■□□□□ 0.3
RNF40O75150 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 AC021097.1-201ENST00000607902 574 ntBASIC16.94■□□□□ 0.3
RNF40O75150 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
RNF40O75150 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.94■□□□□ 0.3
RNF40O75150 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.94■□□□□ 0.3
RNF40O75150 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RNF40O75150 LINC00552-201ENST00000625151 2579 ntBASIC16.93■□□□□ 0.3
RNF40O75150 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
RNF40O75150 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
RNF40O75150 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
RNF40O75150 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 POU5F1P6-201ENST00000466990 990 ntBASIC16.93■□□□□ 0.3
RNF40O75150 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.93■□□□□ 0.3
RNF40O75150 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.93■□□□□ 0.3
RNF40O75150 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.93■□□□□ 0.3
RNF40O75150 SPDYE12P-201ENST00000618416 771 ntBASIC16.93■□□□□ 0.3
RNF40O75150 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
RNF40O75150 AL590560.3-201ENST00000623350 461 ntBASIC16.93■□□□□ 0.3
RNF40O75150 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.93■□□□□ 0.3
RNF40O75150 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.93■□□□□ 0.3
RNF40O75150 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RNF40O75150 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF40O75150 AP3S2-216ENST00000617003 1561 ntBASIC16.93■□□□□ 0.3
RNF40O75150 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
RNF40O75150 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RNF40O75150 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.92■□□□□ 0.3
RNF40O75150 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 MIR648-201ENST00000385046 94 ntBASIC16.92■□□□□ 0.3
RNF40O75150 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.92■□□□□ 0.3
RNF40O75150 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF40O75150 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.92■□□□□ 0.3
RNF40O75150 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.92■□□□□ 0.3
RNF40O75150 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.92■□□□□ 0.3
RNF40O75150 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RNF40O75150 AC027307.3-201ENST00000594262 1100 ntBASIC16.92■□□□□ 0.3
RNF40O75150 AC009118.2-201ENST00000613275 655 ntBASIC16.92■□□□□ 0.3
RNF40O75150 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
RNF40O75150 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF40O75150 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF40O75150 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RNF40O75150 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms