Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 AC126365.1-201ENST00000578585 1514 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.34□□□□□ -0.27
SDCBPO00560 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.34□□□□□ -0.27
SDCBPO00560 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
SDCBPO00560 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.34□□□□□ -0.27
SDCBPO00560 IGHV3-62-201ENST00000520057 340 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.34□□□□□ -0.27
SDCBPO00560 MIR4313-201ENST00000580760 101 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 AC073389.1-201ENST00000595595 795 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 AC026120.1-201ENST00000611536 926 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 AC023024.2-201ENST00000623561 1993 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 AC007191.1-201ENST00000623179 2995 ntBASIC13.34□□□□□ -0.27
SDCBPO00560 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SDCBPO00560 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.34□□□□□ -0.27
SDCBPO00560 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SDCBPO00560 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
SDCBPO00560 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.33□□□□□ -0.27
SDCBPO00560 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
SDCBPO00560 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SDCBPO00560 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.27
SDCBPO00560 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SDCBPO00560 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SDCBPO00560 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.33□□□□□ -0.28
SDCBPO00560 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 FGD5P1-202ENST00000614866 2498 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
SDCBPO00560 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
SDCBPO00560 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.33□□□□□ -0.28
SDCBPO00560 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.33□□□□□ -0.28
SDCBPO00560 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 AC004832.2-201ENST00000426397 482 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.33□□□□□ -0.28
SDCBPO00560 ACTG1P14-201ENST00000446382 1122 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.33□□□□□ -0.28
SDCBPO00560 TIMM8BP1-201ENST00000452384 211 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.33□□□□□ -0.28
SDCBPO00560 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.33□□□□□ -0.28
SDCBPO00560 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.33□□□□□ -0.28
SDCBPO00560 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.33□□□□□ -0.28
SDCBPO00560 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.33□□□□□ -0.28
SDCBPO00560 MTDHP5-201ENST00000598980 586 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 C20orf181-201ENST00000623918 480 ntBASIC13.33□□□□□ -0.28
SDCBPO00560 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SDCBPO00560 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
SDCBPO00560 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms