Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 AC097376.2-205ENST00000610159 5334 ntBASIC16.24■□□□□ 0.19
CCDC188H7C350 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC188H7C350 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CCDC188H7C350 AL355306.1-201ENST00000415580 579 ntBASIC16.24■□□□□ 0.19
CCDC188H7C350 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC188H7C350 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.24■□□□□ 0.19
CCDC188H7C350 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC188H7C350 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.24■□□□□ 0.19
CCDC188H7C350 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
CCDC188H7C350 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
CCDC188H7C350 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC188H7C350 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC188H7C350 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 AL671277.1-201ENST00000429656 993 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC188H7C350 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 RN7SL589P-201ENST00000481268 310 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 FAM86C2P-203ENST00000528684 1004 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC188H7C350 AC034105.1-201ENST00000563488 319 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 AP000842.3-202ENST00000569238 1080 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 RN7SL510P-201ENST00000581311 263 ntBASIC16.23■□□□□ 0.19
CCDC188H7C350 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC188H7C350 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC188H7C350 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC188H7C350 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 AP000845.1-201ENST00000581677 2131 ntBASIC16.22■□□□□ 0.19
CCDC188H7C350 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC188H7C350 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CCDC188H7C350 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC188H7C350 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC188H7C350 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CCDC188H7C350 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC188H7C350 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC188H7C350 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms