Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIMA1Q9UHB6 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 NORAD-201ENST00000565493 5339 ntBASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 Z97205.2-201ENST00000564697 1639 ntBASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 KRT18P64-201ENST00000434946 1219 ntBASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 AL079307.3-201ENST00000556114 283 ntBASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 AL671883.3-201ENST00000603274 991 ntBASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIMA1Q9UHB6 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 AC104457.1-201ENST00000401024 814 ntBASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 MTND6P24-201ENST00000440466 518 ntBASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIMA1Q9UHB6 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIMA1Q9UHB6 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.02■□□□□ 0.32
LIMA1Q9UHB6 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
LIMA1Q9UHB6 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms