Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLCF1Q9UBD9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 BOLA2P3-201ENST00000404566 256 ntBASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 KRT43P-201ENST00000434019 910 ntBASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AC022210.1-201ENST00000449856 793 ntBASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.85□□□□□ -0.19
CLCF1Q9UBD9 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AC005229.1-201ENST00000392885 409 ntBASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 MIR1909-201ENST00000411312 80 ntBASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AP001889.1-201ENST00000525414 633 ntBASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 MIR6752-201ENST00000618442 71 ntBASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms