Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RPL13AP20-201ENST00000459725 609 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 MIR4525-201ENST00000580000 75 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 RN7SL219P-201ENST00000582872 296 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 GPR182-203ENST00000622922 591 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 AC138951.2-201ENST00000623455 1161 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 AC008687.7-202ENST00000637404 953 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 AL158070.2-201ENST00000623713 1621 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 AC008894.3-201ENST00000624324 3103 ntBASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.51■□□□□ 0.23
PAAF1Q9BRP4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 YBX1P6-201ENST00000442962 1002 ntBASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 AC108725.1-201ENST00000495472 409 ntBASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 AC010328.2-201ENST00000597698 1111 ntBASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 PRSS30P-206ENST00000641773 873 ntBASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.5■□□□□ 0.23
PAAF1Q9BRP4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.49■□□□□ 0.23
PAAF1Q9BRP4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms