Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SLC25A39P2-201ENST00000537614 270 ntBASIC11.75□□□□□ -0.53
LINC00477Q96M19 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC11.75□□□□□ -0.53
LINC00477Q96M19 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00477Q96M19 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00477Q96M19 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 IMP4-203ENST00000409935 958 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 AC004832.2-201ENST00000426397 482 ntBASIC11.74□□□□□ -0.53
LINC00477Q96M19 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 NMU-202ENST00000505262 693 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 WASH3P-207ENST00000560956 1394 ntBASIC11.74□□□□□ -0.53
LINC00477Q96M19 FO538757.1-201ENST00000623083 1397 ntBASIC11.74□□□□□ -0.53
LINC00477Q96M19 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00477Q96M19 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 MARS-233ENST00000628866 2583 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00477Q96M19 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC00477Q96M19 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC00477Q96M19 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms