Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 AZGP1P1-201ENST00000411909 902 ntBASIC17.77■□□□□ 0.44
ERCC4Q92889 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.77■□□□□ 0.44
ERCC4Q92889 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.77■□□□□ 0.44
ERCC4Q92889 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 PGAM5P1-201ENST00000518923 814 ntBASIC17.77■□□□□ 0.44
ERCC4Q92889 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.77■□□□□ 0.44
ERCC4Q92889 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.77■□□□□ 0.44
ERCC4Q92889 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ERCC4Q92889 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.77■□□□□ 0.44
ERCC4Q92889 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
ERCC4Q92889 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 AC117489.1-201ENST00000625169 3217 ntBASIC17.77■□□□□ 0.43
ERCC4Q92889 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
ERCC4Q92889 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.77■□□□□ 0.43
ERCC4Q92889 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.77■□□□□ 0.43
ERCC4Q92889 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
ERCC4Q92889 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.43
ERCC4Q92889 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ERCC4Q92889 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.76■□□□□ 0.43
ERCC4Q92889 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 PCDHA3-202ENST00000532566 4594 ntBASIC17.76■□□□□ 0.43
ERCC4Q92889 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
ERCC4Q92889 YBX2P1-201ENST00000394192 760 ntBASIC17.76■□□□□ 0.43
ERCC4Q92889 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.76■□□□□ 0.43
ERCC4Q92889 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.76■□□□□ 0.43
ERCC4Q92889 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.76■□□□□ 0.43
ERCC4Q92889 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.76■□□□□ 0.43
ERCC4Q92889 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 RN7SL589P-201ENST00000481268 310 ntBASIC17.76■□□□□ 0.43
ERCC4Q92889 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.76■□□□□ 0.43
ERCC4Q92889 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ERCC4Q92889 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.76■□□□□ 0.43
ERCC4Q92889 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ERCC4Q92889 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.76■□□□□ 0.43
ERCC4Q92889 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ERCC4Q92889 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.75■□□□□ 0.43
ERCC4Q92889 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ERCC4Q92889 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.75■□□□□ 0.43
ERCC4Q92889 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms