Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NKX2-3Q8TAU0 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 AL133267.1-201ENST00000398220 340 ntBASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 CSF2RBP1-201ENST00000447905 391 ntBASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 MSTO2P-201ENST00000314835 1709 ntBASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NKX2-3Q8TAU0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 MIR3615-201ENST00000581999 87 ntBASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 AL049840.4-201ENST00000602422 811 ntBASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 PPA1-206ENST00000625364 644 ntTSL 5 BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NKX2-3Q8TAU0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
NKX2-3Q8TAU0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 GPAA1P2-201ENST00000417923 928 ntBASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 RHOQP1-201ENST00000555758 579 ntBASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
NKX2-3Q8TAU0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms