Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 AC148477.4-201ENST00000613430 1793 ntBASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMC1BQ8NDV3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 AP000356.3-201ENST00000382243 753 ntBASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 AC012158.2-201ENST00000536546 354 ntBASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 PLS3-210ENST00000626746 216 ntTSL 4 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMC1BQ8NDV3 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AL512430.1-201ENST00000392575 860 ntBASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC073150.1-201ENST00000450406 1084 ntBASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC090164.2-201ENST00000611487 516 ntBASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 HLA-A-202ENST00000376806 1854 ntBASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 AC099398.1-201ENST00000567919 2776 ntBASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMC1BQ8NDV3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 AC138894.2-201ENST00000602838 371 ntBASIC18.31■□□□□ 0.52
SMC1BQ8NDV3 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms