Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC006122.1-201ENST00000493323 440 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC10.9□□□□□ -0.66
PRKDCP78527 AC138696.2-201ENST00000607376 223 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 AL138725.1-201ENST00000407347 1314 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC10.9□□□□□ -0.66
PRKDCP78527 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
PRKDCP78527 HLA-DMA-203ENST00000395305 777 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC10.9□□□□□ -0.66
PRKDCP78527 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 ORAOV1P1-201ENST00000503108 395 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC10.9□□□□□ -0.66
PRKDCP78527 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC10.9□□□□□ -0.66
PRKDCP78527 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
PRKDCP78527 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC10.9□□□□□ -0.66
PRKDCP78527 MIR4472-1-201ENST00000584349 80 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 AC087392.5-201ENST00000612517 489 ntBASIC10.9□□□□□ -0.66
PRKDCP78527 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
PRKDCP78527 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC10.9□□□□□ -0.67
PRKDCP78527 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 AF274858.1-201ENST00000406288 372 ntBASIC10.9□□□□□ -0.67
PRKDCP78527 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC10.9□□□□□ -0.67
PRKDCP78527 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
PRKDCP78527 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC10.9□□□□□ -0.67
PRKDCP78527 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 MIR2392-201ENST00000584881 84 ntBASIC10.9□□□□□ -0.67
PRKDCP78527 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC10.9□□□□□ -0.67
PRKDCP78527 AC004466.2-201ENST00000614749 516 ntBASIC10.9□□□□□ -0.67
PRKDCP78527 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
PRKDCP78527 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
PRKDCP78527 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
PRKDCP78527 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC10.89□□□□□ -0.67
PRKDCP78527 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC10.89□□□□□ -0.67
PRKDCP78527 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC10.89□□□□□ -0.67
PRKDCP78527 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 BANP-227ENST00000626016 2144 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 CCNC-217ENST00000523985 958 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC10.89□□□□□ -0.67
PRKDCP78527 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
PRKDCP78527 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
PRKDCP78527 NME4-203ENST00000397722 1232 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 AL157407.1-201ENST00000435784 904 ntBASIC10.89□□□□□ -0.67
PRKDCP78527 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 LINC01783-202ENST00000614408 828 ntBASIC10.89□□□□□ -0.67
PRKDCP78527 BX284668.2-205ENST00000619677 828 ntBASIC10.89□□□□□ -0.67
PRKDCP78527 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
PRKDCP78527 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
PRKDCP78527 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
PRKDCP78527 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
PRKDCP78527 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC10.88□□□□□ -0.67
PRKDCP78527 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms