Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.35■□□□□ 0.85
RIPK4P57078 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC20.35■□□□□ 0.85
RIPK4P57078 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RIPK4P57078 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC20.35■□□□□ 0.85
RIPK4P57078 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
RIPK4P57078 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RIPK4P57078 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC20.35■□□□□ 0.85
RIPK4P57078 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RIPK4P57078 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
RIPK4P57078 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RIPK4P57078 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.34■□□□□ 0.85
RIPK4P57078 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RIPK4P57078 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC20.34■□□□□ 0.85
RIPK4P57078 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RIPK4P57078 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 TMEM14DP-201ENST00000422205 345 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.34■□□□□ 0.85
RIPK4P57078 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.34■□□□□ 0.85
RIPK4P57078 GIMAP3P-201ENST00000495150 836 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC20.34■□□□□ 0.85
RIPK4P57078 ENPP7P5-201ENST00000541031 1031 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.34■□□□□ 0.85
RIPK4P57078 CLUHP6-201ENST00000580789 941 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 AC239800.4-201ENST00000603712 296 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 AC093813.1-201ENST00000605066 256 ntBASIC20.34■□□□□ 0.85
RIPK4P57078 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC20.34■□□□□ 0.85
RIPK4P57078 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RIPK4P57078 USE1-206ENST00000595101 1776 ntTSL 2 BASIC20.34■□□□□ 0.85
RIPK4P57078 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 AL138799.1-201ENST00000448213 1675 ntBASIC20.33■□□□□ 0.85
RIPK4P57078 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC20.33■□□□□ 0.85
RIPK4P57078 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
RIPK4P57078 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
RIPK4P57078 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.33■□□□□ 0.85
RIPK4P57078 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.33■□□□□ 0.85
RIPK4P57078 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
RIPK4P57078 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.33■□□□□ 0.85
RIPK4P57078 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.33■□□□□ 0.85
RIPK4P57078 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.33■□□□□ 0.85
RIPK4P57078 AC005252.2-201ENST00000624630 1141 ntBASIC20.33■□□□□ 0.85
RIPK4P57078 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RIPK4P57078 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC20.33■□□□□ 0.84
RIPK4P57078 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
RIPK4P57078 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RIPK4P57078 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
RIPK4P57078 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RIPK4P57078 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms