Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.82□□□□□ -0.04
LIM2P55344 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.82□□□□□ -0.04
LIM2P55344 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.82□□□□□ -0.04
LIM2P55344 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
LIM2P55344 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.82□□□□□ -0.04
LIM2P55344 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LIM2P55344 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.81□□□□□ -0.04
LIM2P55344 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.81□□□□□ -0.04
LIM2P55344 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 SERBP1P5-201ENST00000510079 1181 ntBASIC14.81□□□□□ -0.04
LIM2P55344 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.81□□□□□ -0.04
LIM2P55344 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
LIM2P55344 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.81□□□□□ -0.04
LIM2P55344 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LIM2P55344 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.81□□□□□ -0.04
LIM2P55344 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.81□□□□□ -0.04
LIM2P55344 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LIM2P55344 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LIM2P55344 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
LIM2P55344 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 SPDYE19P-201ENST00000338590 713 ntBASIC14.8□□□□□ -0.04
LIM2P55344 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.8□□□□□ -0.04
LIM2P55344 MIR661-201ENST00000384842 89 ntBASIC14.8□□□□□ -0.04
LIM2P55344 AL133267.1-201ENST00000398220 340 ntBASIC14.8□□□□□ -0.04
LIM2P55344 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.8□□□□□ -0.04
LIM2P55344 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.8□□□□□ -0.04
LIM2P55344 FAM207CP-201ENST00000443486 507 ntBASIC14.8□□□□□ -0.04
LIM2P55344 GNAQP1-201ENST00000444815 1067 ntBASIC14.8□□□□□ -0.04
LIM2P55344 SPTLC1P1-201ENST00000447199 261 ntBASIC14.8□□□□□ -0.04
LIM2P55344 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LIM2P55344 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.8□□□□□ -0.04
LIM2P55344 AC015910.1-201ENST00000579400 975 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms