Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
NKX2-1P43699 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.85□□□□□ -0.35
NKX2-1P43699 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AC109635.5-201ENST00000533593 962 ntBASIC12.85□□□□□ -0.35
NKX2-1P43699 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC12.85□□□□□ -0.35
NKX2-1P43699 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
NKX2-1P43699 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
NKX2-1P43699 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.85□□□□□ -0.35
NKX2-1P43699 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
NKX2-1P43699 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC12.85□□□□□ -0.35
NKX2-1P43699 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
NKX2-1P43699 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 WASH3P-207ENST00000560956 1394 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 FO538757.1-201ENST00000623083 1397 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 AC015656.1-201ENST00000624209 3578 ntBASIC12.84□□□□□ -0.35
NKX2-1P43699 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
NKX2-1P43699 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
NKX2-1P43699 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
NKX2-1P43699 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.84□□□□□ -0.35
NKX2-1P43699 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.84□□□□□ -0.35
NKX2-1P43699 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms