Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.98□□□□□ -0.01
MSX2P35548 AC092474.2-201ENST00000424288 719 ntBASIC14.98□□□□□ -0.01
MSX2P35548 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX2P35548 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 RNPS1P1-201ENST00000507437 918 ntBASIC14.98□□□□□ -0.01
MSX2P35548 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX2P35548 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX2P35548 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 ACE3P-201ENST00000423435 1973 ntBASIC14.97□□□□□ -0.01
MSX2P35548 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.97□□□□□ -0.01
MSX2P35548 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.97□□□□□ -0.01
MSX2P35548 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.97□□□□□ -0.01
MSX2P35548 AC243562.2-201ENST00000561247 970 ntBASIC14.97□□□□□ -0.01
MSX2P35548 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
MSX2P35548 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
MSX2P35548 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX2P35548 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
MSX2P35548 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX2P35548 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
MSX2P35548 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.96□□□□□ -0.01
MSX2P35548 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 AL645939.2-201ENST00000427340 991 ntBASIC14.96□□□□□ -0.01
MSX2P35548 PRYP6-201ENST00000514804 343 ntBASIC14.96□□□□□ -0.01
MSX2P35548 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX2P35548 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 MIR4751-201ENST00000578027 74 ntBASIC14.96□□□□□ -0.01
MSX2P35548 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX2P35548 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX2P35548 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.96□□□□□ -0.01
MSX2P35548 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
MSX2P35548 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
MSX2P35548 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms