Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.62□□□□□ -0.23
COL8A1P27658 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 RN7SL736P-201ENST00000613111 269 ntBASIC13.62□□□□□ -0.23
COL8A1P27658 AC006453.4-201ENST00000636949 1252 ntBASIC13.62□□□□□ -0.23
COL8A1P27658 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
COL8A1P27658 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
COL8A1P27658 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL8A1P27658 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.62□□□□□ -0.23
COL8A1P27658 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 GGT4P-201ENST00000623672 1708 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 AL354989.2-201ENST00000435838 1540 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.61□□□□□ -0.23
COL8A1P27658 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 AC004987.2-201ENST00000395959 1148 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.61□□□□□ -0.23
COL8A1P27658 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.61□□□□□ -0.23
COL8A1P27658 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.61□□□□□ -0.23
COL8A1P27658 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.61□□□□□ -0.23
COL8A1P27658 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 ECM1P1-201ENST00000604092 1279 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.61□□□□□ -0.23
COL8A1P27658 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 AC132938.4-201ENST00000623835 848 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC13.61□□□□□ -0.23
COL8A1P27658 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.61□□□□□ -0.23
COL8A1P27658 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 AL138688.1-201ENST00000624851 1594 ntBASIC13.61□□□□□ -0.23
COL8A1P27658 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
COL8A1P27658 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.61□□□□□ -0.23
COL8A1P27658 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL8A1P27658 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.61□□□□□ -0.23
COL8A1P27658 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.6□□□□□ -0.23
COL8A1P27658 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
COL8A1P27658 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL8A1P27658 AC008132.1-202ENST00000342005 1389 ntBASIC13.6□□□□□ -0.23
COL8A1P27658 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms