Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.98■■□□□ 1.11
MSH5O43196 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
MSH5O43196 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 CYB5A-201ENST00000299438 718 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.98■■□□□ 1.11
MSH5O43196 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.98■■□□□ 1.11
MSH5O43196 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
MSH5O43196 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC21.98■■□□□ 1.11
MSH5O43196 AC092474.1-201ENST00000416158 1167 ntBASIC21.98■■□□□ 1.11
MSH5O43196 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 MTND2P4-201ENST00000445034 1004 ntBASIC21.98■■□□□ 1.11
MSH5O43196 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.98■■□□□ 1.11
MSH5O43196 ENY2-208ENST00000520147 857 ntTSL 4 BASIC21.98■■□□□ 1.11
MSH5O43196 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 AL512356.2-201ENST00000546955 174 ntBASIC21.98■■□□□ 1.11
MSH5O43196 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
MSH5O43196 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 AL590787.1-201ENST00000568856 1315 ntBASIC21.98■■□□□ 1.11
MSH5O43196 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH5O43196 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH5O43196 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH5O43196 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH5O43196 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH5O43196 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 FAM8A4P-201ENST00000435433 1213 ntBASIC21.97■■□□□ 1.11
MSH5O43196 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 AC140878.1-201ENST00000565277 250 ntBASIC21.97■■□□□ 1.11
MSH5O43196 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH5O43196 AC068135.2-201ENST00000569293 1028 ntBASIC21.97■■□□□ 1.11
MSH5O43196 AC027307.3-201ENST00000594262 1100 ntBASIC21.97■■□□□ 1.11
MSH5O43196 AC010978.1-206ENST00000598281 828 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH5O43196 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 AC023762.1-201ENST00000603280 584 ntBASIC21.97■■□□□ 1.11
MSH5O43196 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH5O43196 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.97■■□□□ 1.11
MSH5O43196 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
MSH5O43196 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
MSH5O43196 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH5O43196 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.96■■□□□ 1.11
MSH5O43196 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
MSH5O43196 CSRP3-202ENST00000533783 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC21.96■■□□□ 1.11
MSH5O43196 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC21.96■■□□□ 1.11
MSH5O43196 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
MSH5O43196 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH5O43196 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.96■■□□□ 1.11
MSH5O43196 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms