Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 MIR574-201ENST00000385209 96 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.36□□□□□ -0.27
SDCBPO00560 SPDYE11-202ENST00000450699 704 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 AC098859.1-201ENST00000502915 1238 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 SPDYE9P-201ENST00000570642 692 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 AC024267.1-201ENST00000582320 895 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 SPDYE10P-202ENST00000612005 668 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 SPDYE8P-202ENST00000612377 668 ntBASIC13.36□□□□□ -0.27
SDCBPO00560 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
SDCBPO00560 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SDCBPO00560 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SDCBPO00560 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SDCBPO00560 AC117489.1-201ENST00000625169 3217 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.35□□□□□ -0.27
SDCBPO00560 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SDCBPO00560 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 AC232323.1-201ENST00000540724 2099 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 REXO1L5P-201ENST00000622260 2098 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.35□□□□□ -0.27
SDCBPO00560 YBX2P1-201ENST00000394192 760 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SDCBPO00560 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 MCCD1P2-201ENST00000423228 335 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.35□□□□□ -0.27
SDCBPO00560 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 AC027307.2-201ENST00000591252 911 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SDCBPO00560 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.35□□□□□ -0.27
SDCBPO00560 SPTSSB-204ENST00000617024 1292 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 AC008267.7-201ENST00000624570 1194 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 AC092902.6-201ENST00000641783 218 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.35□□□□□ -0.27
SDCBPO00560 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.35□□□□□ -0.27
SDCBPO00560 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
SDCBPO00560 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 AC148477.4-201ENST00000613430 1793 ntBASIC13.35□□□□□ -0.27
SDCBPO00560 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SDCBPO00560 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
SDCBPO00560 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms