Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 KRT17P7-201ENST00000451704 1104 ntBASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AC097359.3-201ENST00000603982 1210 ntBASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AC022532.1-201ENST00000624563 1728 ntBASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CLIP2Q9UDT6 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 AC136604.1-201ENST00000418535 575 ntBASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 INE1-201ENST00000456273 945 ntBASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 RRP7BP-205ENST00000566851 833 ntBASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 AL607033.1-201ENST00000623900 1599 ntBASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.55■□□□□ 0.56
CLIP2Q9UDT6 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 RN7SL399P-201ENST00000471648 279 ntBASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 AL391069.4-201ENST00000609583 481 ntBASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 AL158212.4-201ENST00000624062 1286 ntBASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 LINC02228-204ENST00000642115 2962 ntBASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLIP2Q9UDT6 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms