Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 SLED1-202ENST00000512051 380 ntBASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 AC104794.3-201ENST00000566840 1248 ntBASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CUEDC1Q9NWM3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 AC004233.3-201ENST00000607794 1269 ntBASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 TSPY26P-202ENST00000565928 3884 ntBASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CUEDC1Q9NWM3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CUEDC1Q9NWM3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms