Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC105250.1-201ENST00000509378 2057 ntBASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC114812.1-204ENST00000449669 728 ntBASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AL022328.1-201ENST00000610050 478 ntBASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 PCDHA1-201ENST00000378133 2726 ntBASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP4AQ9BY43 AC068587.6-202ENST00000641839 5619 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 BAATP1-201ENST00000412284 1225 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC022137.2-201ENST00000503482 481 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 KRT18P25-201ENST00000508931 1278 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 TDH-203ENST00000531764 1110 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 MIR5189-201ENST00000577370 114 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AC233724.13-201ENST00000598383 410 ntBASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP4AQ9BY43 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 SLC25A47P1-201ENST00000531577 414 ntBASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 CLUHP6-201ENST00000580789 941 ntBASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP4AQ9BY43 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms