Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 AC092552.1-201ENST00000547243 906 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 WASH4P-201ENST00000564273 1246 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 AC120045.2-201ENST00000567334 178 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 SPDYE22P-201ENST00000582158 798 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 LINC01101-201ENST00000622953 1884 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 OR6D1P-202ENST00000641007 5290 ntBASIC18.82■□□□□ 0.6
SALL3Q9BXA9 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SALL3Q9BXA9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 AL442647.2-201ENST00000429864 857 ntBASIC18.81■□□□□ 0.6
SALL3Q9BXA9 ELK1P1-201ENST00000485699 580 ntBASIC18.81■□□□□ 0.6
SALL3Q9BXA9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 PRSS30P-206ENST00000641773 873 ntBASIC18.81■□□□□ 0.6
SALL3Q9BXA9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SALL3Q9BXA9 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AC123567.1-201ENST00000548294 1261 ntBASIC18.8■□□□□ 0.6
SALL3Q9BXA9 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 RPSAP52-203ENST00000622976 1023 ntBASIC18.8■□□□□ 0.6
SALL3Q9BXA9 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 FGD5P1-202ENST00000614866 2498 ntBASIC18.8■□□□□ 0.6
SALL3Q9BXA9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 AL391825.1-201ENST00000457671 1364 ntBASIC18.8■□□□□ 0.6
SALL3Q9BXA9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SALL3Q9BXA9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SALL3Q9BXA9 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms