Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 AC023024.2-201ENST00000623561 1993 ntBASIC13.73□□□□□ -0.21
NKX3-1Q99801 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 AC010327.4-202ENST00000591484 748 ntBASIC13.73□□□□□ -0.21
NKX3-1Q99801 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 AC068137.2-201ENST00000605408 478 ntBASIC13.73□□□□□ -0.21
NKX3-1Q99801 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.73□□□□□ -0.21
NKX3-1Q99801 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 AP002472.1-201ENST00000577490 586 ntBASIC13.72□□□□□ -0.21
NKX3-1Q99801 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 AL691432.1-201ENST00000596308 1422 ntBASIC13.72□□□□□ -0.21
NKX3-1Q99801 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
NKX3-1Q99801 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NKX3-1Q99801 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NKX3-1Q99801 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NKX3-1Q99801 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms