Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC027601.4-201ENST00000611259 610 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 SPDYE10P-202ENST00000612005 668 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 SPDYE8P-202ENST00000612377 668 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 AC092902.6-201ENST00000641783 218 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 AL607033.1-201ENST00000623900 1599 ntBASIC16.91■□□□□ 0.3
CCDC42Q96M95 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 MED15P5-201ENST00000423150 992 ntBASIC16.91■□□□□ 0.3
CCDC42Q96M95 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 KRT8P23-201ENST00000560090 1207 ntBASIC16.91■□□□□ 0.3
CCDC42Q96M95 LINC01225-203ENST00000563550 1244 ntBASIC16.91■□□□□ 0.3
CCDC42Q96M95 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC42Q96M95 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC42Q96M95 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AC136604.1-201ENST00000418535 575 ntBASIC16.9■□□□□ 0.3
CCDC42Q96M95 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AC140113.2-201ENST00000604370 208 ntBASIC16.9■□□□□ 0.3
CCDC42Q96M95 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 AC026120.1-201ENST00000611536 926 ntBASIC16.9■□□□□ 0.3
CCDC42Q96M95 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC42Q96M95 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC42Q96M95 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms