Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 SERBP1P3-201ENST00000459980 809 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 DOC2GP-202ENST00000514950 1163 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 CHCHD2P3-201ENST00000603038 451 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 LINC01115-203ENST00000606068 577 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 MIR6069-201ENST00000620069 79 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.68■□□□□ 0.58
CHMP4CQ96CF2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 PCDHA3-202ENST00000532566 4594 ntBASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 PIN1P1-201ENST00000412108 996 ntBASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 AC005034.1-201ENST00000426657 489 ntBASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP4CQ96CF2 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC023310.3-201ENST00000557027 670 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC100756.1-201ENST00000562736 682 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC138749.3-201ENST00000567691 622 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC116165.1-201ENST00000611806 668 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 AC132872.4-202ENST00000622924 2756 ntBASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4CQ96CF2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4CQ96CF2 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4CQ96CF2 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4CQ96CF2 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4CQ96CF2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4CQ96CF2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms