Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC236430.1-201ENST00000402231 743 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 MEP1AP4-201ENST00000423244 1087 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 SPTLC1P1-201ENST00000447199 261 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 SERBP1P5-201ENST00000510079 1181 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 AC004233.3-201ENST00000607794 1269 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 PAUPAR-201ENST00000630360 2965 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 AF228730.6-201ENST00000641497 218 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 AC084121.3-201ENST00000641716 218 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 TMBIM7P-203ENST00000641617 1718 ntBASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NUP54Q7Z3B4 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 TERF1P3-201ENST00000505638 1227 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC104794.3-201ENST00000566840 1248 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC138969.3-201ENST00000546612 1459 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC138932.2-201ENST00000548268 1459 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC126755.4-201ENST00000549796 1459 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AP003680.1-201ENST00000598970 3660 ntBASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NUP54Q7Z3B4 AC126177.1-201ENST00000547829 2218 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms