Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC026803.1-201ENST00000569130 274 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 PHBP15-201ENST00000574228 665 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC073911.3-201ENST00000624401 631 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC013726.1-201ENST00000563747 2285 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 MIR557-201ENST00000385239 98 ntBASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 AP001527.2-201ENST00000614441 631 ntBASIC16.1■□□□□ 0.17
CHD9Q3L8U1 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 AL031713.1-201ENST00000564813 661 ntBASIC16.1■□□□□ 0.17
CHD9Q3L8U1 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 FO393412.1-201ENST00000619841 382 ntBASIC16.1■□□□□ 0.17
CHD9Q3L8U1 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 SHC1P1-201ENST00000425230 1745 ntBASIC16.1■□□□□ 0.17
CHD9Q3L8U1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHD9Q3L8U1 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FAM58BP-201ENST00000439056 645 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 RPL7P35-201ENST00000446943 740 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC005632.3-201ENST00000605544 308 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 VDAC1P1-201ENST00000439229 848 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 POU5F1P2-201ENST00000521750 823 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AL136295.7-201ENST00000619226 1200 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FAM90A7P-201ENST00000382628 1395 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FAM90A23P-201ENST00000400136 1395 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC244394.1-201ENST00000435000 1665 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AL512430.1-201ENST00000392575 860 ntBASIC16.09■□□□□ 0.17
CHD9Q3L8U1 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CHD9Q3L8U1 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CHD9Q3L8U1 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CHD9Q3L8U1 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CHD9Q3L8U1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.08■□□□□ 0.17
CHD9Q3L8U1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms