Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.07□□□□□ -0.48
HIST1H1AQ02539 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 AC011477.6-201ENST00000604980 1927 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 MIR940-201ENST00000401276 94 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 ST20-AS1-201ENST00000560255 4223 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 AC079781.5-202ENST00000641784 3743 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 AC006486.2-201ENST00000624246 2199 ntBASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HIST1H1AQ02539 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 AC023274.1-201ENST00000418278 595 ntBASIC12.05□□□□□ -0.48
HIST1H1AQ02539 FAM58CP-201ENST00000435741 640 ntBASIC12.05□□□□□ -0.48
HIST1H1AQ02539 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.05□□□□□ -0.48
HIST1H1AQ02539 FDX1P1-201ENST00000449115 551 ntBASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms