Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC091167.2-201ENST00000579581 588 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 MPDU1-223ENST00000582151 728 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 SIGLEC29P-201ENST00000599873 1114 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC11.08□□□□□ -0.64
CKS1BP61024 AL022326.1-202ENST00000641533 845 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC11.08□□□□□ -0.64
CKS1BP61024 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC11.08□□□□□ -0.64
CKS1BP61024 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 FTO-214ENST00000636218 2227 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
CKS1BP61024 AL603832.2-201ENST00000566195 2125 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 TRIM80P-201ENST00000455685 2848 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AC010491.1-201ENST00000563101 2797 ntBASIC11.07□□□□□ -0.64
CKS1BP61024 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
CKS1BP61024 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 NIN-202ENST00000324330 4364 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 GUK1-204ENST00000366721 689 ntTSL 3 BASIC11.07□□□□□ -0.64
CKS1BP61024 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AL031133.1-201ENST00000406807 723 ntBASIC11.07□□□□□ -0.64
CKS1BP61024 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 IGHV3-47-201ENST00000425060 335 ntBASIC11.07□□□□□ -0.64
CKS1BP61024 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 STARD13-205ENST00000439831 945 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 PRYP5-201ENST00000451909 266 ntBASIC11.07□□□□□ -0.64
CKS1BP61024 BX005266.1-201ENST00000473402 457 ntBASIC11.07□□□□□ -0.64
CKS1BP61024 PTK2-216ENST00000519881 863 ntTSL 3 BASIC11.07□□□□□ -0.64
CKS1BP61024 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC11.07□□□□□ -0.64
CKS1BP61024 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC11.07□□□□□ -0.64
CKS1BP61024 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC11.07□□□□□ -0.64
CKS1BP61024 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
CKS1BP61024 STRCP1-201ENST00000509801 5328 ntBASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms