Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL7P35-201ENST00000446943 740 ntBASIC21.26■□□□□ 0.99
MSH6P52701 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH6P52701 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC21.26■□□□□ 0.99
MSH6P52701 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 DNM1P30-201ENST00000563586 452 ntBASIC21.26■□□□□ 0.99
MSH6P52701 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
MSH6P52701 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
MSH6P52701 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH6P52701 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
MSH6P52701 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
MSH6P52701 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
MSH6P52701 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 IGHV3-37-201ENST00000518544 340 ntBASIC21.25■□□□□ 0.99
MSH6P52701 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC21.25■□□□□ 0.99
MSH6P52701 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC21.25■□□□□ 0.99
MSH6P52701 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 AL132994.2-201ENST00000603120 687 ntBASIC21.25■□□□□ 0.99
MSH6P52701 MIR6842-201ENST00000612539 65 ntBASIC21.25■□□□□ 0.99
MSH6P52701 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
MSH6P52701 AC242376.2-201ENST00000619355 883 ntBASIC21.25■□□□□ 0.99
MSH6P52701 AC138466.3-201ENST00000619983 221 ntBASIC21.25■□□□□ 0.99
MSH6P52701 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH6P52701 FLJ38576-201ENST00000623820 2459 ntBASIC21.25■□□□□ 0.99
MSH6P52701 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH6P52701 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH6P52701 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
MSH6P52701 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 NKILA-202ENST00000614771 2598 ntBASIC21.25■□□□□ 0.99
MSH6P52701 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH6P52701 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
MSH6P52701 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH6P52701 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MSH6P52701 RPS9P1-201ENST00000419943 583 ntBASIC21.24■□□□□ 0.99
MSH6P52701 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC21.24■□□□□ 0.99
MSH6P52701 AC004066.1-201ENST00000502488 802 ntBASIC21.24■□□□□ 0.99
MSH6P52701 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
MSH6P52701 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 AC009955.4-201ENST00000597192 544 ntBASIC21.24■□□□□ 0.99
MSH6P52701 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
MSH6P52701 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 AL603764.1-201ENST00000636452 321 ntBASIC21.24■□□□□ 0.99
MSH6P52701 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 AC007787.1-201ENST00000588095 1583 ntBASIC21.24■□□□□ 0.99
MSH6P52701 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH6P52701 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH6P52701 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
MSH6P52701 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH6P52701 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC21.23■□□□□ 0.99
MSH6P52701 AC079112.1-201ENST00000454972 939 ntBASIC21.23■□□□□ 0.99
MSH6P52701 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH6P52701 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
MSH6P52701 AP002803.1-201ENST00000528836 498 ntBASIC21.23■□□□□ 0.99
MSH6P52701 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
MSH6P52701 AC100827.2-201ENST00000563214 1194 ntBASIC21.23■□□□□ 0.99
MSH6P52701 AL031713.1-201ENST00000564813 661 ntBASIC21.23■□□□□ 0.99
MSH6P52701 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC21.23■□□□□ 0.99
MSH6P52701 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH6P52701 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms