Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 CXCL1P1-201ENST00000502804 216 ntBASIC12.87□□□□□ -0.35
NKX2-1P43699 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.87□□□□□ -0.35
NKX2-1P43699 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC12.87□□□□□ -0.35
NKX2-1P43699 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
NKX2-1P43699 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.87□□□□□ -0.35
NKX2-1P43699 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 REXO1L1P-202ENST00000608646 1974 ntBASIC12.87□□□□□ -0.35
NKX2-1P43699 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
NKX2-1P43699 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
NKX2-1P43699 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
NKX2-1P43699 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
NKX2-1P43699 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.86□□□□□ -0.35
NKX2-1P43699 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 CICP14-201ENST00000629111 2732 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 ATP6V0CP3-201ENST00000417255 467 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC12.86□□□□□ -0.35
NKX2-1P43699 AL513480.1-201ENST00000451731 511 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
NKX2-1P43699 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC12.86□□□□□ -0.35
NKX2-1P43699 OR7E14P-202ENST00000530490 1290 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC12.86□□□□□ -0.35
NKX2-1P43699 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 OR7E47P-204ENST00000575924 449 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC12.86□□□□□ -0.35
NKX2-1P43699 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.86□□□□□ -0.35
NKX2-1P43699 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 AC005840.4-201ENST00000541242 2494 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.86□□□□□ -0.35
NKX2-1P43699 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
NKX2-1P43699 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
NKX2-1P43699 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
NKX2-1P43699 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms