Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.35■□□□□ 0.05
SHMT2P34897 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.35■□□□□ 0.05
SHMT2P34897 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.35■□□□□ 0.05
SHMT2P34897 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.35■□□□□ 0.05
SHMT2P34897 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.35■□□□□ 0.05
SHMT2P34897 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 AC092337.1-201ENST00000568699 1129 ntBASIC15.35■□□□□ 0.05
SHMT2P34897 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
SHMT2P34897 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.35■□□□□ 0.05
SHMT2P34897 AC004233.3-201ENST00000607794 1269 ntBASIC15.35■□□□□ 0.05
SHMT2P34897 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.35■□□□□ 0.05
SHMT2P34897 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.35■□□□□ 0.05
SHMT2P34897 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.35■□□□□ 0.05
SHMT2P34897 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SHMT2P34897 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.35■□□□□ 0.05
SHMT2P34897 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.35■□□□□ 0.05
SHMT2P34897 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHMT2P34897 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.34■□□□□ 0.05
SHMT2P34897 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 MIR661-201ENST00000384842 89 ntBASIC15.34■□□□□ 0.05
SHMT2P34897 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.34■□□□□ 0.05
SHMT2P34897 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.34■□□□□ 0.05
SHMT2P34897 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 AC097359.3-201ENST00000603982 1210 ntBASIC15.34■□□□□ 0.05
SHMT2P34897 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.34■□□□□ 0.05
SHMT2P34897 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 AC018892.3-201ENST00000623986 2499 ntBASIC15.34■□□□□ 0.05
SHMT2P34897 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.34■□□□□ 0.05
SHMT2P34897 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.34■□□□□ 0.05
SHMT2P34897 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHMT2P34897 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.33■□□□□ 0.05
SHMT2P34897 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SHMT2P34897 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SHMT2P34897 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SHMT2P34897 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SHMT2P34897 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.33■□□□□ 0.05
SHMT2P34897 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
SHMT2P34897 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
SHMT2P34897 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHMT2P34897 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.33■□□□□ 0.04
SHMT2P34897 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 SPTLC1P1-201ENST00000447199 261 ntBASIC15.33■□□□□ 0.04
SHMT2P34897 DOC2GP-202ENST00000514950 1163 ntBASIC15.33■□□□□ 0.04
SHMT2P34897 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHMT2P34897 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.33■□□□□ 0.04
SHMT2P34897 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.33■□□□□ 0.04
SHMT2P34897 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SHMT2P34897 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.33■□□□□ 0.04
SHMT2P34897 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms