Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HMGA1P17096 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.04■□□□□ 0.16
HMGA1P17096 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.04■□□□□ 0.16
HMGA1P17096 AHCYP2-201ENST00000430630 1300 ntBASIC16.04■□□□□ 0.16
HMGA1P17096 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HMGA1P17096 CD8B2-202ENST00000417670 633 ntBASIC16.04■□□□□ 0.16
HMGA1P17096 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.04■□□□□ 0.16
HMGA1P17096 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.04■□□□□ 0.16
HMGA1P17096 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.04■□□□□ 0.16
HMGA1P17096 RN7SL219P-201ENST00000582872 296 ntBASIC16.04■□□□□ 0.16
HMGA1P17096 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 ECM1P1-201ENST00000604092 1279 ntBASIC16.04■□□□□ 0.16
HMGA1P17096 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.04■□□□□ 0.16
HMGA1P17096 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HMGA1P17096 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
HMGA1P17096 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HMGA1P17096 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HMGA1P17096 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.04■□□□□ 0.16
HMGA1P17096 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.03■□□□□ 0.16
HMGA1P17096 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HMGA1P17096 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 BRWD1P1-201ENST00000401091 371 ntBASIC16.03■□□□□ 0.16
HMGA1P17096 MIR1202-201ENST00000408529 83 ntBASIC16.03■□□□□ 0.16
HMGA1P17096 EIF3FP3-201ENST00000434851 1086 ntBASIC16.03■□□□□ 0.16
HMGA1P17096 AC108725.1-201ENST00000495472 409 ntBASIC16.03■□□□□ 0.16
HMGA1P17096 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.03■□□□□ 0.16
HMGA1P17096 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.03■□□□□ 0.16
HMGA1P17096 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HMGA1P17096 RN7SL560P-201ENST00000577943 264 ntBASIC16.03■□□□□ 0.16
HMGA1P17096 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.03■□□□□ 0.16
HMGA1P17096 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGA1P17096 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HMGA1P17096 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGA1P17096 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
HMGA1P17096 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms