Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 AC139749.1-202ENST00000617529 3139 ntBASIC17.31■□□□□ 0.36
TPM1P09493 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 BCAR1-209ENST00000546196 1340 ntBASIC17.31■□□□□ 0.36
TPM1P09493 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.31■□□□□ 0.36
TPM1P09493 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 SPTSSB-204ENST00000617024 1292 ntBASIC17.31■□□□□ 0.36
TPM1P09493 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TPM1P09493 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TPM1P09493 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TPM1P09493 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
TPM1P09493 AC025580.3-201ENST00000617932 1424 ntBASIC17.3■□□□□ 0.36
TPM1P09493 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TPM1P09493 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TPM1P09493 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.3■□□□□ 0.36
TPM1P09493 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 LINC00552-201ENST00000625151 2579 ntBASIC17.3■□□□□ 0.36
TPM1P09493 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.3■□□□□ 0.36
TPM1P09493 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TPM1P09493 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.3■□□□□ 0.36
TPM1P09493 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.3■□□□□ 0.36
TPM1P09493 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TPM1P09493 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TPM1P09493 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.29■□□□□ 0.36
TPM1P09493 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TPM1P09493 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.29■□□□□ 0.36
TPM1P09493 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.29■□□□□ 0.36
TPM1P09493 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.29■□□□□ 0.36
TPM1P09493 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TPM1P09493 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.29■□□□□ 0.36
TPM1P09493 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TPM1P09493 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms