Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 AC078925.2-201ENST00000624013 1973 ntBASIC14.24□□□□□ -0.13
HOXD4P09016 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HOXD4P09016 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 AC079776.1-201ENST00000401540 1152 ntBASIC14.24□□□□□ -0.13
HOXD4P09016 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXD4P09016 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.24□□□□□ -0.13
HOXD4P09016 KRT17P8-201ENST00000540749 863 ntBASIC14.24□□□□□ -0.13
HOXD4P09016 RAB43P1-201ENST00000561790 589 ntBASIC14.24□□□□□ -0.13
HOXD4P09016 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.24□□□□□ -0.13
HOXD4P09016 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HOXD4P09016 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXD4P09016 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXD4P09016 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXD4P09016 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD4P09016 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 AC073347.1-201ENST00000421633 2643 ntBASIC14.23□□□□□ -0.13
HOXD4P09016 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.23□□□□□ -0.13
HOXD4P09016 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD4P09016 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HOXD4P09016 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD4P09016 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXD4P09016 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.23□□□□□ -0.13
HOXD4P09016 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD4P09016 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD4P09016 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.22□□□□□ -0.13
HOXD4P09016 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD4P09016 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXD4P09016 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 MIR1909-201ENST00000411312 80 ntBASIC14.22□□□□□ -0.13
HOXD4P09016 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXD4P09016 AC112492.5-201ENST00000421897 457 ntBASIC14.22□□□□□ -0.13
HOXD4P09016 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD4P09016 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD4P09016 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.22□□□□□ -0.13
HOXD4P09016 WASH4P-201ENST00000564273 1246 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms