Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC21.42■■□□□ 1.02
NPHP4O75161 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC21.42■■□□□ 1.02
NPHP4O75161 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC21.42■■□□□ 1.02
NPHP4O75161 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 AC084364.1-201ENST00000551967 1556 ntBASIC21.42■■□□□ 1.02
NPHP4O75161 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NPHP4O75161 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP4O75161 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
NPHP4O75161 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 MIR557-201ENST00000385239 98 ntBASIC21.41■■□□□ 1.02
NPHP4O75161 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 HPN-206ENST00000597419 1212 ntTSL 5 BASIC21.41■■□□□ 1.02
NPHP4O75161 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP4O75161 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP4O75161 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP4O75161 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 INE2-201ENST00000630399 1874 ntBASIC21.4■■□□□ 1.02
NPHP4O75161 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP4O75161 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC21.4■■□□□ 1.02
NPHP4O75161 PSMD4P1-201ENST00000433951 1109 ntBASIC21.4■■□□□ 1.02
NPHP4O75161 AL627422.1-201ENST00000434104 580 ntBASIC21.4■■□□□ 1.02
NPHP4O75161 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP4O75161 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP4O75161 EIF5AP2-201ENST00000585668 1047 ntBASIC21.4■■□□□ 1.02
NPHP4O75161 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP4O75161 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC21.4■■□□□ 1.02
NPHP4O75161 AC090502.4-201ENST00000551714 1386 ntBASIC21.4■■□□□ 1.02
NPHP4O75161 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP4O75161 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP4O75161 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP4O75161 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP4O75161 NCR3-202ENST00000376071 541 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP4O75161 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP4O75161 AL583805.1-201ENST00000391389 531 ntBASIC21.39■■□□□ 1.02
NPHP4O75161 AL357563.1-201ENST00000404728 395 ntBASIC21.39■■□□□ 1.02
NPHP4O75161 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC21.39■■□□□ 1.02
NPHP4O75161 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP4O75161 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP4O75161 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC21.39■■□□□ 1.02
NPHP4O75161 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP4O75161 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC21.39■■□□□ 1.02
NPHP4O75161 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC21.39■■□□□ 1.02
NPHP4O75161 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP4O75161 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
NPHP4O75161 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP4O75161 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.02
NPHP4O75161 AC092299.1-201ENST00000632679 757 ntBASIC21.39■■□□□ 1.02
NPHP4O75161 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC21.39■■□□□ 1.02
NPHP4O75161 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC21.39■■□□□ 1.01
NPHP4O75161 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 AC011840.2-201ENST00000563063 1520 ntBASIC21.39■■□□□ 1.01
NPHP4O75161 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
NPHP4O75161 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP4O75161 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC21.39■■□□□ 1.01
NPHP4O75161 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP4O75161 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
NPHP4O75161 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC21.38■■□□□ 1.01
NPHP4O75161 AC107464.3-201ENST00000609172 737 ntBASIC21.38■■□□□ 1.01
NPHP4O75161 AC084781.1-201ENST00000613737 656 ntBASIC21.38■■□□□ 1.01
NPHP4O75161 ETV2-207ENST00000619399 994 ntTSL 5 BASIC21.38■■□□□ 1.01
NPHP4O75161 AC244250.3-201ENST00000620749 366 ntBASIC21.38■■□□□ 1.01
NPHP4O75161 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
NPHP4O75161 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP4O75161 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP4O75161 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.38■■□□□ 1.01
NPHP4O75161 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP4O75161 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
NPHP4O75161 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP4O75161 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP4O75161 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms