Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
MSH5O43196 TCAF2P1-201ENST00000291129 2421 ntBASIC22.01■■□□□ 1.11
MSH5O43196 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 PROCR-201ENST00000216968 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
MSH5O43196 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 AC115619.1-201ENST00000567376 1605 ntBASIC22■■□□□ 1.11
MSH5O43196 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
MSH5O43196 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 ABRACL-201ENST00000367660 845 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC22■■□□□ 1.11
MSH5O43196 NANOGP9-201ENST00000439890 892 ntBASIC22■■□□□ 1.11
MSH5O43196 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC22■■□□□ 1.11
MSH5O43196 ZNF886P-201ENST00000450781 723 ntBASIC22■■□□□ 1.11
MSH5O43196 RPS8P10-201ENST00000460876 622 ntBASIC22■■□□□ 1.11
MSH5O43196 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC22■■□□□ 1.11
MSH5O43196 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC22■■□□□ 1.11
MSH5O43196 DUTP2-201ENST00000519164 463 ntBASIC22■■□□□ 1.11
MSH5O43196 FAM76A-207ENST00000530324 1027 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC22■■□□□ 1.11
MSH5O43196 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC22■■□□□ 1.11
MSH5O43196 RAB11AP2-201ENST00000545905 639 ntBASIC22■■□□□ 1.11
MSH5O43196 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC22■■□□□ 1.11
MSH5O43196 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC22■■□□□ 1.11
MSH5O43196 AL359881.2-201ENST00000602973 570 ntBASIC22■■□□□ 1.11
MSH5O43196 AL358072.1-201ENST00000604156 575 ntBASIC22■■□□□ 1.11
MSH5O43196 AP001059.3-201ENST00000619053 235 ntBASIC22■■□□□ 1.11
MSH5O43196 AC135068.6-201ENST00000625294 622 ntBASIC22■■□□□ 1.11
MSH5O43196 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
MSH5O43196 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22■■□□□ 1.11
MSH5O43196 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
MSH5O43196 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
MSH5O43196 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC22■■□□□ 1.11
MSH5O43196 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC22■■□□□ 1.11
MSH5O43196 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
MSH5O43196 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 RPL12P33-201ENST00000485633 492 ntBASIC21.99■■□□□ 1.11
MSH5O43196 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.99■■□□□ 1.11
MSH5O43196 EEF1B2P4-201ENST00000551398 348 ntBASIC21.99■■□□□ 1.11
MSH5O43196 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 AC008751.2-201ENST00000597885 980 ntBASIC21.99■■□□□ 1.11
MSH5O43196 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC21.99■■□□□ 1.11
MSH5O43196 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 OR4G3P-201ENST00000633500 913 ntBASIC21.99■■□□□ 1.11
MSH5O43196 AC090582.1-201ENST00000636321 199 ntBASIC21.99■■□□□ 1.11
MSH5O43196 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 CSRP3-201ENST00000265968 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH5O43196 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH5O43196 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH5O43196 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms