Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 MIR346-201ENST00000362234 95 ntBASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 CEND1P1-201ENST00000451006 455 ntBASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 LINC01225-203ENST00000563550 1244 ntBASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 AP000842.3-202ENST00000569238 1080 ntBASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC39Q9UFE4 MYO15B-237ENST00000642007 4893 ntBASIC18.21■□□□□ 0.5
CCDC39Q9UFE4 AC005840.4-201ENST00000541242 2494 ntBASIC18.21■□□□□ 0.5
CCDC39Q9UFE4 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC39Q9UFE4 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AP001282.1-201ENST00000531301 1499 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AL592309.1-201ENST00000443127 649 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 RNA5SP410-201ENST00000516285 106 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AC061975.2-201ENST00000581722 295 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 AC007686.3-201ENST00000619017 3487 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 CICP14-201ENST00000629111 2732 ntBASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC39Q9UFE4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 UXT-AS1-201ENST00000590504 1525 ntBASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 FAM220BP-201ENST00000377689 816 ntBASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC39Q9UFE4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms