Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.03■□□□□ -0
VPS29Q9UBQ0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
VPS29Q9UBQ0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
VPS29Q9UBQ0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
VPS29Q9UBQ0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VPS29Q9UBQ0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 AC023024.2-201ENST00000623561 1993 ntBASIC15.02■□□□□ -0
VPS29Q9UBQ0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 PCDHA3-202ENST00000532566 4594 ntBASIC15.02■□□□□ -0
VPS29Q9UBQ0 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 RPL37AP1-201ENST00000412502 279 ntBASIC15.02■□□□□ -0
VPS29Q9UBQ0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.02■□□□□ -0
VPS29Q9UBQ0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 AC109322.1-201ENST00000524499 1264 ntBASIC15.02■□□□□ -0
VPS29Q9UBQ0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.02■□□□□ -0
VPS29Q9UBQ0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
VPS29Q9UBQ0 Z97205.2-201ENST00000564697 1639 ntBASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 AC084364.1-201ENST00000551967 1556 ntBASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VPS29Q9UBQ0 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 FO538757.1-201ENST00000623083 1397 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 TSEN15P1-201ENST00000423257 515 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 CNN2P2-201ENST00000443536 909 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 CNN2P3-201ENST00000450201 906 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 HLA-V-204ENST00000476601 1289 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 AL136317.3-201ENST00000618497 906 ntBASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS29Q9UBQ0 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms