Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 AC013726.1-201ENST00000563747 2285 ntBASIC16.75■□□□□ 0.27
SIX2Q9NPC8 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SIX2Q9NPC8 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC099063.4-201ENST00000641099 1602 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC138969.3-201ENST00000546612 1459 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC138932.2-201ENST00000548268 1459 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC126755.4-201ENST00000549796 1459 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC106881.1-201ENST00000605849 3329 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 TSPY26P-202ENST00000565928 3884 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 SPDYE18-201ENST00000510091 1050 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC092337.1-201ENST00000568699 1129 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AL391069.4-201ENST00000609583 481 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 ACE3P-201ENST00000423435 1973 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 REXO1L2P-201ENST00000425429 2069 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 WASH3P-207ENST00000560956 1394 ntBASIC16.74■□□□□ 0.27
SIX2Q9NPC8 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SIX2Q9NPC8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AL589987.1-201ENST00000453380 819 ntBASIC16.73■□□□□ 0.27
SIX2Q9NPC8 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AC000095.1-201ENST00000603208 874 ntBASIC16.73■□□□□ 0.27
SIX2Q9NPC8 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SIX2Q9NPC8 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AL390955.2-201ENST00000603032 514 ntBASIC16.72■□□□□ 0.27
SIX2Q9NPC8 AC004790.1-201ENST00000612686 536 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms