Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF41Q9H4P4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 AC068587.6-202ENST00000641839 5619 ntBASIC18.38■□□□□ 0.53
RNF41Q9H4P4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 AC026410.3-201ENST00000514280 936 ntBASIC18.38■□□□□ 0.53
RNF41Q9H4P4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 CTBP2P3-201ENST00000585629 1255 ntBASIC18.38■□□□□ 0.53
RNF41Q9H4P4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 AL645728.2-202ENST00000641679 227 ntBASIC18.38■□□□□ 0.53
RNF41Q9H4P4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF41Q9H4P4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AP006294.1-201ENST00000415407 339 ntBASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 GAPDHP40-201ENST00000505218 1006 ntBASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AC133539.2-201ENST00000604757 467 ntBASIC18.37■□□□□ 0.53
RNF41Q9H4P4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 DRD5P1-201ENST00000456605 1438 ntBASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 SSR4P1-203ENST00000599569 2260 ntBASIC18.37■□□□□ 0.53
RNF41Q9H4P4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF41Q9H4P4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF41Q9H4P4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms