Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 MBLAC2-202ENST00000514906 1936 ntBASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AC020922.3-201ENST00000595064 547 ntBASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 NKILA-202ENST00000614771 2598 ntBASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 NDUFS6P1-201ENST00000485187 316 ntBASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 AC021723.1-201ENST00000486306 515 ntBASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 STUB1-204ENST00000564370 875 ntTSL 2 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 AL132994.2-201ENST00000603120 687 ntBASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHANK3Q9BYB0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AC242376.1-201ENST00000559033 726 ntBASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AL157813.1-201ENST00000612996 587 ntBASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 AC004923.1-202ENST00000642106 209 ntBASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHANK3Q9BYB0 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AC026434.2-201ENST00000506094 1078 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AC138894.2-201ENST00000602838 371 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AL353770.1-201ENST00000614915 403 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 RN7SKP214-201ENST00000364208 315 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 RTN3P1-201ENST00000536295 711 ntBASIC19.68■□□□□ 0.74
SHANK3Q9BYB0 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms