Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 IGLV3-15-201ENST00000518356 244 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 RTN3P1-201ENST00000536295 711 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 AC135983.4-201ENST00000564116 1262 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 MIR4783-201ENST00000580343 82 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 COX6A1P2-201ENST00000620597 330 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 AC006453.1-201ENST00000636037 1257 ntBASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRIM43Q96BQ3 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 NOC2LP1-201ENST00000450578 752 ntBASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 KRT18P66-201ENST00000452970 1269 ntBASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 AC125604.1-201ENST00000496255 707 ntBASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRIM43Q96BQ3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 AC018695.7-201ENST00000624587 2492 ntBASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM43Q96BQ3 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms