Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC126365.1-201ENST00000578585 1514 ntBASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC025678.2-201ENST00000562061 970 ntBASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC010336.2-201ENST00000564226 506 ntBASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AP002414.2-201ENST00000591780 3365 ntBASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF549Q6P9A3 AC023824.1-201ENST00000562945 2975 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AL513477.1-201ENST00000602865 2407 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AC092580.3-201ENST00000430932 139 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 KLF2P3-201ENST00000451977 1087 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 SERBP1P3-201ENST00000459980 809 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AC125807.1-201ENST00000483097 614 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AC139530.3-201ENST00000620344 690 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AF228730.6-201ENST00000641497 218 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 AC084121.3-201ENST00000641716 218 ntBASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF549Q6P9A3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms