Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AC244452.3-201ENST00000636814 210 ntBASIC15.1■□□□□ 0.01
COL28A1Q2UY09 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AC132872.4-202ENST00000622924 2756 ntBASIC15.1■□□□□ 0.01
COL28A1Q2UY09 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AL513523.2-202ENST00000427283 2040 ntBASIC15.09■□□□□ 0.01
COL28A1Q2UY09 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AC079316.1-201ENST00000548397 411 ntBASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
COL28A1Q2UY09 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL28A1Q2UY09 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.08■□□□□ 0
COL28A1Q2UY09 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 SPDYE17-201ENST00000412399 783 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.08■□□□□ 0
COL28A1Q2UY09 AL355864.2-201ENST00000447420 863 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 AC005077.2-201ENST00000449786 690 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 AKR7A2P1-201ENST00000460134 915 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.08■□□□□ 0
COL28A1Q2UY09 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 AC026740.1-201ENST00000607068 791 ntBASIC15.08■□□□□ 0
COL28A1Q2UY09 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.08■□□□□ 0
COL28A1Q2UY09 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.08■□□□□ 0
COL28A1Q2UY09 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL28A1Q2UY09 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms