Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.46□□□□□ -0.26
ABCA4P78363 AC106760.1-201ENST00000508690 800 ntBASIC13.46□□□□□ -0.26
ABCA4P78363 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.46□□□□□ -0.26
ABCA4P78363 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
ABCA4P78363 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.46□□□□□ -0.26
ABCA4P78363 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
ABCA4P78363 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
ABCA4P78363 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.45□□□□□ -0.26
ABCA4P78363 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
ABCA4P78363 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 AC005695.3-201ENST00000614522 232 ntBASIC13.45□□□□□ -0.26
ABCA4P78363 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
ABCA4P78363 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
ABCA4P78363 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.45□□□□□ -0.26
ABCA4P78363 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.45□□□□□ -0.26
ABCA4P78363 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA4P78363 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.44□□□□□ -0.26
ABCA4P78363 AC104306.2-201ENST00000451877 341 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 MPRIPP1-201ENST00000452433 1089 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
ABCA4P78363 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
ABCA4P78363 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
ABCA4P78363 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
ABCA4P78363 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
ABCA4P78363 SLC25A24P2-201ENST00000415059 510 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.44□□□□□ -0.26
ABCA4P78363 AC016629.1-201ENST00000596579 586 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA4P78363 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.44□□□□□ -0.26
ABCA4P78363 AC091271.1-201ENST00000611877 1162 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA4P78363 AC138028.6-201ENST00000616106 1482 ntBASIC13.44□□□□□ -0.26
ABCA4P78363 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.44□□□□□ -0.26
ABCA4P78363 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
ABCA4P78363 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
ABCA4P78363 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA4P78363 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA4P78363 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.43□□□□□ -0.26
ABCA4P78363 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA4P78363 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA4P78363 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA4P78363 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.43□□□□□ -0.26
ABCA4P78363 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
ABCA4P78363 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
ABCA4P78363 CNN2P8-201ENST00000421872 913 ntBASIC13.43□□□□□ -0.26
ABCA4P78363 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.43□□□□□ -0.26
ABCA4P78363 LDHBP1-201ENST00000455730 1119 ntBASIC13.43□□□□□ -0.26
ABCA4P78363 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
ABCA4P78363 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.43□□□□□ -0.26
ABCA4P78363 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
ABCA4P78363 ACTG1P17-201ENST00000558391 1119 ntBASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms