Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SOX2P48431 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SOX2P48431 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.85□□□□□ -0.19
SOX2P48431 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.85□□□□□ -0.19
SOX2P48431 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.85□□□□□ -0.19
SOX2P48431 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 AC098859.1-201ENST00000502915 1238 ntBASIC13.85□□□□□ -0.19
SOX2P48431 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.85□□□□□ -0.19
SOX2P48431 AC061975.2-201ENST00000581722 295 ntBASIC13.85□□□□□ -0.19
SOX2P48431 SPTSSB-204ENST00000617024 1292 ntBASIC13.85□□□□□ -0.19
SOX2P48431 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.85□□□□□ -0.19
SOX2P48431 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.85□□□□□ -0.19
SOX2P48431 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.85□□□□□ -0.19
SOX2P48431 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SOX2P48431 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
SOX2P48431 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 AC004870.1-201ENST00000315132 882 ntBASIC13.84□□□□□ -0.19
SOX2P48431 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.84□□□□□ -0.19
SOX2P48431 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX2P48431 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX2P48431 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 IGHV3-22-201ENST00000520721 359 ntBASIC13.84□□□□□ -0.19
SOX2P48431 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX2P48431 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX2P48431 RN7SL510P-201ENST00000581311 263 ntBASIC13.84□□□□□ -0.19
SOX2P48431 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 Z83851.2-201ENST00000609564 659 ntBASIC13.84□□□□□ -0.19
SOX2P48431 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.84□□□□□ -0.19
SOX2P48431 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms