Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC19.43■□□□□ 0.7
RFC4P35249 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.43■□□□□ 0.7
RFC4P35249 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.43■□□□□ 0.7
RFC4P35249 HIST2H2BB-201ENST00000449108 381 ntBASIC19.43■□□□□ 0.7
RFC4P35249 AC021723.1-201ENST00000486306 515 ntBASIC19.43■□□□□ 0.7
RFC4P35249 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.43■□□□□ 0.7
RFC4P35249 AL391280.1-201ENST00000506969 1062 ntBASIC19.43■□□□□ 0.7
RFC4P35249 AC022217.1-201ENST00000521069 738 ntBASIC19.43■□□□□ 0.7
RFC4P35249 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.43■□□□□ 0.7
RFC4P35249 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.43■□□□□ 0.7
RFC4P35249 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.43■□□□□ 0.7
RFC4P35249 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.43■□□□□ 0.7
RFC4P35249 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.43■□□□□ 0.7
RFC4P35249 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 AC079336.7-201ENST00000623428 1078 ntBASIC19.43■□□□□ 0.7
RFC4P35249 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
RFC4P35249 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFC4P35249 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.43■□□□□ 0.7
RFC4P35249 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
RFC4P35249 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.42■□□□□ 0.7
RFC4P35249 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 POM121L8P-201ENST00000417732 1281 ntBASIC19.42■□□□□ 0.7
RFC4P35249 AL354877.1-201ENST00000424412 413 ntBASIC19.42■□□□□ 0.7
RFC4P35249 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 POM121L9P-203ENST00000441984 1285 ntBASIC19.42■□□□□ 0.7
RFC4P35249 AC100850.1-201ENST00000506768 649 ntBASIC19.42■□□□□ 0.7
RFC4P35249 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.42■□□□□ 0.7
RFC4P35249 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC19.42■□□□□ 0.7
RFC4P35249 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.42■□□□□ 0.7
RFC4P35249 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.42■□□□□ 0.7
RFC4P35249 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.42■□□□□ 0.7
RFC4P35249 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFC4P35249 AL645939.5-201ENST00000606834 243 ntBASIC19.42■□□□□ 0.7
RFC4P35249 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.42■□□□□ 0.7
RFC4P35249 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFC4P35249 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.41■□□□□ 0.7
RFC4P35249 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 EIF3FP3-201ENST00000434851 1086 ntBASIC19.41■□□□□ 0.7
RFC4P35249 EEF1DP6-201ENST00000449232 372 ntBASIC19.41■□□□□ 0.7
RFC4P35249 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.41■□□□□ 0.7
RFC4P35249 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
RFC4P35249 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.41■□□□□ 0.7
RFC4P35249 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 AC008132.1-202ENST00000342005 1389 ntBASIC19.41■□□□□ 0.7
RFC4P35249 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19.41■□□□□ 0.7
RFC4P35249 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RFC4P35249 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFC4P35249 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RFC4P35249 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 AC022188.1-201ENST00000620960 1664 ntBASIC19.4■□□□□ 0.7
RFC4P35249 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RFC4P35249 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RFC4P35249 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFC4P35249 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms