Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 AC022210.1-201ENST00000449856 793 ntBASIC12.14□□□□□ -0.47
HOXD3P31249 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 AC092337.1-201ENST00000568699 1129 ntBASIC12.14□□□□□ -0.47
HOXD3P31249 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.14□□□□□ -0.47
HOXD3P31249 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 AC093726.1-201ENST00000608064 963 ntBASIC12.14□□□□□ -0.47
HOXD3P31249 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXD3P31249 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 PCDHA1-201ENST00000378133 2726 ntBASIC12.14□□□□□ -0.47
HOXD3P31249 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXD3P31249 CLK3P2-201ENST00000427566 1453 ntBASIC12.14□□□□□ -0.47
HOXD3P31249 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXD3P31249 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
HOXD3P31249 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 CICP6-201ENST00000457191 2729 ntBASIC12.13□□□□□ -0.47
HOXD3P31249 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HOXD3P31249 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXD3P31249 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXD3P31249 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXD3P31249 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 SLED1-202ENST00000512051 380 ntBASIC12.13□□□□□ -0.47
HOXD3P31249 FADS2-205ENST00000517839 469 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXD3P31249 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXD3P31249 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXD3P31249 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HOXD3P31249 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXD3P31249 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXD3P31249 AL512343.1-201ENST00000605837 169 ntBASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms