Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
COL8A1P27658 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 AP000346.4-201ENST00000614827 381 ntBASIC13.66□□□□□ -0.22
COL8A1P27658 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.66□□□□□ -0.22
COL8A1P27658 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL8A1P27658 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL8A1P27658 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.65□□□□□ -0.22
COL8A1P27658 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL8A1P27658 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.65□□□□□ -0.22
COL8A1P27658 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL8A1P27658 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL8A1P27658 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.65□□□□□ -0.22
COL8A1P27658 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 KRT18P66-201ENST00000452970 1269 ntBASIC13.65□□□□□ -0.22
COL8A1P27658 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL8A1P27658 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.65□□□□□ -0.22
COL8A1P27658 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 RN7SL574P-201ENST00000581512 297 ntBASIC13.65□□□□□ -0.22
COL8A1P27658 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.65□□□□□ -0.22
COL8A1P27658 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL8A1P27658 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 AC138649.2-201ENST00000615886 705 ntBASIC13.65□□□□□ -0.22
COL8A1P27658 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.65□□□□□ -0.22
COL8A1P27658 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL8A1P27658 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL8A1P27658 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL8A1P27658 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL8A1P27658 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.64□□□□□ -0.23
COL8A1P27658 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.64□□□□□ -0.23
COL8A1P27658 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.64□□□□□ -0.23
COL8A1P27658 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.64□□□□□ -0.23
COL8A1P27658 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
COL8A1P27658 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.64□□□□□ -0.23
COL8A1P27658 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 RN7SL774P-201ENST00000577467 290 ntBASIC13.64□□□□□ -0.23
COL8A1P27658 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.64□□□□□ -0.23
COL8A1P27658 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.64□□□□□ -0.23
COL8A1P27658 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.64□□□□□ -0.23
COL8A1P27658 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL8A1P27658 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms